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  • Quantitative shotgun proteomics with data-independent acquisition and traveling wave ion mobility sp...

    Content Type: Journal Citations | Content Subtype: - Format: | Date(s): December 01, 2014
    Data-independent acquisition (DIA) implemented in a method called MS(E) can be performed in a massively parallel, time-based schedule rather than by sampling masses sequentially in shotgun proteomics. In MSE alternating low and high energy spectra are col...
  • In-depth evaluation of software tools for data-independent acquisition-based label-free quantificati...

    Content Type: Journal Citations | Content Subtype: - Format: | Date(s): January 18, 2015
    The present study focuses on the evaluation of three different software packages (Progenesis, synapter and ISOQuant) supporting ion-mobility-enhanced DIA data.
  • Label-free profiling of skeletal muscle using high-definition mass spectrometry

    Content Type: Journal Citations | Content Subtype: - Format: | Date(s): December 01, 2014
    We report automated and time-efficient (2 h per sample) profiling of muscle using ultra-performance LC coupled directly with high-definition MS (HDMSE).
  • Protein deep sequencing applied to biobank samples from patients with pancreatic cancer

    Content Type: Journal Citations | Content Subtype: - Format: | Date(s): December 01, 2014
    Pancreatic cancer is commonly detected at advanced stages when the tumor is no longer amenable to surgical resection. Therefore, finding biomarkers for early stage disease is urgent. Here, we show that high-definition mass spectrometry (HDMSE) can be used...
  • Biomedical applications of ion mobility-enhanced data-independent acquisition-based label-free quant...

    Content Type: Journal Citations | Content Subtype: - Format: | Date(s): December 01, 2014
    The present work provides a thorough overview of the combination of ion mobility and data-independent acquisition-based label-free quantification LC-MS and its applications in biomedical research.
  • Ion mobility tandem mass spectrometry enhances performance of bottom-up proteomics

    Content Type: Journal Citations | Content Subtype: - Format: | Date(s): December 01, 2014
    One of the limiting factors in determining the sensitivity of tandem mass spectrometry using hybrid quadrupole orthogonal acceleration time-of-flight (Q-TOF) instruments is the duty cycle of the orthogonal ion injection system. As a consequence, only a fr...
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    Evaluating Multiplex Fragmentation and Ion Mobility Separations to Improve the Quality of Rapid LCMS...

    Content Type: Journal Citations | Content Subtype: - Format: PDF File Size: 5904.52kB | Date(s): February 12, 2013
    LCMS peptide mapping remains the fundamental technique for defining primary structure for biotherapeutic proteins.
  • Using ion purity scores for enhancing quantitative accuracy and precision in complex proteomics samp...

    Content Type: Journal Citations | Content Subtype: - Format: | Date(s): February 12, 2013
    To accurately determine the quantitative change of peptides and proteins in complex proteomics samples requires knowledge of how well each ion has been measured.
  • Autophagy can repair endoplasmic reticulum stress damage of the passive Heymann nephritis model as r...

    Content Type: Journal Citations | Content Subtype: - Format: | Date(s): October 23, 2012
    We analyzed the passive Heymann nephritis animal model using label-free quantitative proteome technology.